PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Pta000777 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | MYB_related | ||||||||||||||||
Protein Properties | Length: 197aa MW: 21451.7 Da PI: 8.4716 | ||||||||||||||||
Description | MYB_related family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.2 | 3.9e-13 | 103 | 147 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++ ++ + +++G+g+W++I+r + Rt+ q+ s+ qky Pta000777 103 PWTEEEHKMFLLGLEKFGKGDWRSISRNFVISRTPTQVASHAQKY 147 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.65 | 1 | 41 | IPR017884 | SANT domain |
SMART | SM00717 | 49 | 1 | 39 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.34E-4 | 11 | 33 | No hit | No description |
SuperFamily | SSF46689 | 2.66E-5 | 11 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.232 | 95 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.44E-17 | 98 | 153 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.8E-18 | 100 | 150 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.6E-11 | 100 | 150 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-11 | 101 | 146 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-11 | 103 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.79E-11 | 103 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MALADHLEDT KDRWEKIALA VPGKSPAEVK RHYEILVEDI ASIEAGRVPI PCYVDEVAEQ 60 AADNGSAKKG GTHSSVYANL ASENNGTGKG SSKSDQERRK GIPWTEEEHK MFLLGLEKFG 120 KGDWRSISRN FVISRTPTQV ASHAQKYFIR LNSMNRDRRR SSIHDITSVN GSDVSSPQGP 180 ITGQGNQSSG SAGQSAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-15 | 2 | 53 | 22 | 73 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.22533 | 0.0 | xylem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006838124.1 | 8e-90 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 1e-79 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | B8LKB7 | 1e-130 | B8LKB7_PICSI; Uncharacterized protein | ||||
STRING | ERN00693 | 3e-89 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 3e-80 | MYB family protein |
Publications ? help Back to Top | |||
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