PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Pta000699 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | bHLH | ||||||||||||||||
Protein Properties | Length: 238aa MW: 26413.9 Da PI: 6.2985 | ||||||||||||||||
Description | bHLH family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 8.2e-11 | 79 | 126 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL ++l + + p k +Ka+iL A + + +L Pta000699 79 KACREKMRRDRLNDRFMELSSVLEPgR---PPKTADKATILSDAARVMTQL 126 678**********************66...6666**********9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.782 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.17E-8 | 78 | 131 | No hit | No description |
Pfam | PF00010 | 2.7E-8 | 79 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-9 | 80 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-12 | 80 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-12 | 81 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSSPQSNKWL SYFDEPLLDD VGVGQPANPF FWCGQGINDQ PDVSGSVEID GPNKDMDEQD 60 KLCPRKRSRE ESSGGPGSKA CREKMRRDRL NDRFMELSSV LEPGRPPKTA DKATILSDAA 120 RVMTQLRTEA QNLKAENERL QEAIKDLKAE KNELRDEKLR MKAEKEKLEQ QVKAMALPTG 180 FVPHPAAFHA AAAFAAQSQA AANKTMPVPG YPGMAMWQWM PPAVVDTSQD HVLRPPVA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.11485 | 0.0 | root| shoot| xylem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390784.1 | 8e-94 | transcription factor ILR3-like | ||||
Refseq | XP_024390785.1 | 8e-94 | transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 1e-71 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | C0PR23 | 1e-141 | C0PR23_PICSI; Uncharacterized protein | ||||
STRING | PP1S246_45V6.3 | 3e-93 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 7e-62 | bHLH family protein |