PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Pta000663 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | G2-like | ||||||||||||||||
Protein Properties | Length: 256aa MW: 28302.9 Da PI: 7.2668 | ||||||||||||||||
Description | G2-like family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.2 | 7.8e-33 | 29 | 83 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av++LGG++kAtPk+++ m+v+gLtl+h+kSHLQkYRl Pta000663 29 KPRLRWTAELHERFVDAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSHLQKYRL 83 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.424 | 26 | 86 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-30 | 27 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.17E-16 | 28 | 84 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-24 | 29 | 84 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-9 | 31 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.3E-27 | 139 | 185 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MESHSERPVM LQEINVPTET GLVLSTDPKP RLRWTAELHE RFVDAVTKLG GPDKATPKAV 60 RTRMGVEGLT LYHLKSHLQK YRLGKQPHKE VNVDTSRDGS SHGGPVAGYG STACRVPEVQ 120 VACNSVSSII PANMTETLQI TEALRMQMEV QRRLHEQLEV QRHLQLRIEA QGKYLQSILE 180 KARETLAGYN VGSIGLEATR AELSELASKV KSECFNSTFS ALTFSTMPEI PGLFPESQIA 240 HQQSQAADCS AYSCLX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-19 | 29 | 85 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-19 | 29 | 85 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-19 | 29 | 85 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-19 | 29 | 85 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018832813.1 | 4e-85 | PREDICTED: myb-related protein 2-like | ||||
Refseq | XP_018832814.1 | 4e-85 | PREDICTED: myb-related protein 2-like | ||||
Refseq | XP_018832815.1 | 4e-85 | PREDICTED: myb-related protein 2-like | ||||
Swissprot | Q8LAJ7 | 2e-74 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | C0PPV3 | 4e-93 | C0PPV3_PICSI; Uncharacterized protein | ||||
STRING | XP_010264109.1 | 3e-84 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 9e-77 | G2-like family protein |
Publications ? help Back to Top | |||
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