PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000386
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family AP2
Protein Properties Length: 432aa    MW: 47797.5 Da    PI: 6.2359
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25088818PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-15472PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.42.3e-15361420155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pta000386 361 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 420
                57*******************666664478446*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-12361420IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17361430IPR016177DNA-binding domain
CDDcd000181.50E-23361430No hitNo description
Gene3DG3DSA:3.30.730.104.5E-16362429IPR001471AP2/ERF domain
SMARTSM003801.5E-25362432IPR001471AP2/ERF domain
PROSITE profilePS5103219.23362428IPR001471AP2/ERF domain
PRINTSPR003675.4E-5363374IPR001471AP2/ERF domain
PRINTSPR003675.4E-5410430IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MGSTSNWLAF SLSPHLTVDM PDSTQPRSTS AASNHRRHHN DFSNGTVHDC YDLHPTDTMQ  60
MPLRPDGSLC ILEALDRTQN NRDWRLKSLG NLHGCMDSES DVQSEQMMKS DLSILAGGGG  120
SSEQMSASIG RHNNVEQQEG PKLEDFLGGA SLGGHYNDAR TDSIYRNADA FDDKMMVSGL  180
RDVVPNCLNA FDVTDSELSS GSKKTDQNQD PAARNMNPIQ NTLVQDSYDE NSNDQYMFQD  240
CSLQLPQNSG ANNMIGLSMI KTWLRSQPCP ENKMNAAPNS TTPTSAKDQS LGNLTNLQSL  300
SLSMSPGSQS SSPLALPAQY QNTNADSHSS ESKKRSLDQK QGIVVEATPR KSIDTFGQRT  360
SIYRGVTRHR WTGRYEAHLW DNSCRREGQT RKGRQVYLGG YDKEEKAARA YDLAALKYWG  420
PTTTTNFPIS NY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.212010.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A088BUC10.0A0A088BUC1_9SPER; Aintegumenta-like transcription factor baby boom
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-56AP2 family protein