PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000282
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 561aa    MW: 60267.2 Da    PI: 6.9128
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25561308PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-59682550PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.4e-184188148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l
        Pta000282 41 KGPWTSAEDAILVEYVRKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 88
                     79******************************************9986 PP
2Myb_DNA-binding521.6e-1694137146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE+ ++++++++lG++ W++ a++++ gRt++++k++w++
        Pta000282  94 KGAFTAEEERIILELHAKLGNK-WARMAAHLP-GRTDNEIKNYWNT 137
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.273888IPR017930Myb domain
SuperFamilySSF466891.24E-3039135IPR009057Homeodomain-like
SMARTSM007171.0E-154090IPR001005SANT/Myb domain
PfamPF002496.5E-164188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-244295IPR009057Homeodomain-like
CDDcd001679.15E-124388No hitNo description
PROSITE profilePS5129426.29189143IPR017930Myb domain
SMARTSM007171.2E-1693141IPR001005SANT/Myb domain
PfamPF002492.6E-1594137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2596142IPR009057Homeodomain-like
CDDcd001673.21E-1296137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MAAVVLGSEA ASASASASAS ASASASAVKE QAIEEVGTLK KGPWTSAEDA ILVEYVRKHG  60
EGNWNAVQKH SGLSRCGKSC RLRWANHLRP NLKKGAFTAE EERIILELHA KLGNKWARMA  120
AHLPGRTDNE IKNYWNTRIK RRQRAGLPLY PPDVQLQNSN QKAPQTPSEP NNIDLPYESR  180
PSNNPLIFSS KVESGTPSYD GLKHANTNPM PFSGLGNVSM GPLFYQANPI QRVKRVRDTS  240
FIMGPPSSPF GRMGVNGHIG MNDVSKSLQP GFKARVPYPL QAARSDSFVA QGCFPYDPNL  300
SSTSNLPLGG FSSGSHAIMN GTFSSSRLFS GQKLELPSSQ FAESVQTAGS SINPVLNRST  360
PLLLPPVPTQ TINQVDYSFS TPKNSGLLES MFQEAQTMGG VKAHSSSNSS IDLQGGSKSS  420
ISNPLNNGFP MQIKIKHGDN SDPTTPLDGH TFSMFSESTP PLGTSPWDDS SSAQSPIGKA  480
MKSEEPNEGY ISSGSCGDEN VSSMLDLTAD VLPDTDWNAQ ISGIEKDQSL LNDALNTMFT  540
DDLGMGVQQM PSETSPSNQT W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-34391425107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.135090.0root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A222UAP31e-165A0A222UAP3_GINBI; R2R3MYB35