PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000235
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family HD-ZIP
Protein Properties Length: 839aa    MW: 91895.5 Da    PI: 6.2155
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S15799181PU_unrefUnigeneView CDS
gnl|UG|Pta#S34066900PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-5082552PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-181573357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Pta000235 15 KYVRYTSEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73
               6789*****************************************************97 PP
2START164.11e-511613692205
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++  ++l +  +g  g+++l +++++
  Pta000235 161 IAEETLTEFLSKAKGAAVDWVQMPGMKPGPDSIGIVAISNTCNGVAARACGLVGLDPT-KVAEILKDRPSWLRDCRCLDVLTAFPTGngGTIELLYMQTY 259
                789*******************************************************.8888888888*****************999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a ++l++ Rdf+++Ry+  l++g++v++++S++ +q  p+    +++vRae+lpSg+li+p+++g+s + +v+h+dl+ ++++++lr+l++s+++ ++k+
  Pta000235 260 AATTLASaRDFWTLRYTTVLEDGSLVVCERSLSGTQGGPSippVQHFVRAEMLPSGYLIQPCEGGGSIIRIVDHMDLEPWSVPEVLRPLYESSTVLAQKM 359
                ****9999*****************************99999999******************************************************* PP

                HHHHTXXXXX CS
      START 196 wvatlqrqce 205
                + a+l+r+++
  Pta000235 360 TIAALRRLRQ 369
                *****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7751074IPR001356Homeobox domain
SMARTSM003891.1E-141278IPR001356Homeobox domain
CDDcd000868.18E-161575No hitNo description
PfamPF000467.6E-161573IPR001356Homeobox domain
SuperFamilySSF466894.71E-161577IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-181773IPR009057Homeodomain-like
CDDcd146861.77E-667106No hitNo description
PROSITE profilePS5084825.682151366IPR002913START domain
CDDcd088751.84E-74155371No hitNo description
SMARTSM002343.1E-37160370IPR002913START domain
SuperFamilySSF559615.77E-36160372No hitNo description
Gene3DG3DSA:3.30.530.201.2E-23160366IPR023393START-like domain
PfamPF018523.0E-49161369IPR002913START domain
PfamPF086704.5E-47696838IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MANNKDAKNS MDTSKYVRYT SEQVEALERV YSECPKPSSL RRQQLIRECP ILSNIEPKQI  60
KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYMRQQLQ  120
NASVAATDTS CESVVTSGQH QHNPTPQHPP RDASPAGLLS IAEETLTEFL SKAKGAAVDW  180
VQMPGMKPGP DSIGIVAISN TCNGVAARAC GLVGLDPTKV AEILKDRPSW LRDCRCLDVL  240
TAFPTGNGGT IELLYMQTYA ATTLASARDF WTLRYTTVLE DGSLVVCERS LSGTQGGPSI  300
PPVQHFVRAE MLPSGYLIQP CEGGGSIIRI VDHMDLEPWS VPEVLRPLYE SSTVLAQKMT  360
IAALRRLRQI AQEATGEVVF GWGRQPAVLR TFSQRLSRGF NEAVNGFTDD GWSLMGSDGV  420
EDVTIAINSS PNKHFASQVN ASNGLTTLGG GILCAKASML LQNVPPALLV RFLREHRSEW  480
ADSNIDAYSA AALKSSPYSV PGSRAGGFSG SQVILPLAHT VEHEEFLEVI KLEGHGLTQE  540
EAVLSRDMFL LQLCSGIDEN AAGACAELVF APIDESFADD APLLPSGFRV IPLESRTDGS  600
GGPNRTLDLA SALEVGSTGT RTSGDSGTSS NLRSVLTIAF QFTYESHLRE NVAAMARQYV  660
RSVVASVQRV AMAIAPSRLN SHVGPRPPPG TPEALTLARW ICQSYRLHIG VDLFRADCEA  720
SESVLKLLWH HSDAIMCCSV KSLPVFTFAN QAGLDMLETT LVALQDISLD KILDENGRKS  780
FFTDYGQIIQ QGYAYLPAGI CLSSMGRPAS YDRAIAWKVL NDEDSTHCIV FMFMNWSFM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.22260.0root| shoot| xylem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247499.10.0PREDICTED: homeobox-leucine zipper protein HOX32-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ0Q4210.0Q0Q421_PINTA; Class III HD-Zip protein HDZ31
STRINGXP_010247498.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]