PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi012537
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 537aa    MW: 58500.5 Da    PI: 5.7773
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55421654PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-19058PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-06286307223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C++Cgk F+r  n + H+r H
  Psi012537 286 FCEICGKGFRRDANVRMHMRAH 307
                6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-5282310No hitNo description
SMARTSM003550.011285307IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.926285312IPR007087Zinc finger, C2H2
PROSITE patternPS000280287307IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-5287313IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035574341374IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MADDSARLLE IVAMNTARAG HQGFKRVDPR FDPDGVREEG FFAEGSNTSR STEYHAGEGF  60
RGGQLQALSD LHQEEAAGNG GQYFDWSQPA STSEGLLQGS SNNLGAWPAM AAGLSSGAQA  120
QTNTNLLAQA QTNTNLLLAN LSVLQQKAQQ LEAVVQEGHH DQPASGVISS ILYELIVTAA  180
SVLFSVQNRG IANPESAEVQ PIPDTAACVE IQAENRPPPV GVGFGKPPNP NGASDVGFAG  240
GIDLQDEKSP VDIKAEGEEE EASPDDRFYE IIEINEDDIL AEHTHFCEIC GKGFRRDANV  300
RMHMRAHGDE YKTNQALMSR PPDQANKLPA ASSSSPTARR YSCPFERCRR NKNHRNFLPL  360
KSITSLRNHY KRSHCPKMYL ATNATNNSRS WETSKTHGKH CGHNPWRCSC GTTFTRKDKL  420
FGHVALFQGH KPLLPDHELA RPPAPKRHKA TSSGRATTAQ SAGDDDDGNL TELLAGDLAG  480
LADNKFQGYG AGDDDDLFFG PKVIQMGHRQ NEVAIENRFT ESDFWADFSG EFSDACR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A9S20.0D5A9S2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.23e-64C2H2 family protein