PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi012251

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Nin-like

Protein Properties

Length: 837aa MW: 92517 Da PI: 6.9408

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S55422340	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-18814	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.9	2.3e-29	372	422	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Psi012251 372 EKTISLEVLQQYFAGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKV 422 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.268	361	442	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-25	374	422	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.71E-23	739	826	No hit	No description
PROSITE profile	PS51745	19.989	741	815	IPR000270	PB1 domain
SMART	SM00666	3.0E-22	741	823	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.6E-23	744	823	No hit	No description
Pfam	PF00564	4.5E-16	744	820	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence Send to blast
XGVGVVELVM TAQKINYAPE VEKVCRALQA VNLRSSEILD HPQVQFLRHI NCHWLRLGFH 60 AGIETSSLPG VARRKIVRVL MEVAWDKSXM STIDSAFYVI DAHMWGFRDA CTEHHLQKGQ 120 GLPGKAFASN QPSFSNDISS FSKTEYPLVH YARLFNLAAA VAIRLRSTHT GNDDYILEFF 180 LPTDCKDSQN LQMLLKSVSV TMRHVCQSLR MLTDKELEDE KLLEVSKEFE SFDCQNEFPE 240 DGNGQIVIIF QGYLQNCKFL QGAEFVQCQE RKQIVRQDSF QQALQAGSEG DQNEIQMVQH 300 PITSLPFVSC QKQQPELEGS NLSDLKHHRH ESAQINKEIS AVLANDDILC SGSLQEHTNI 360 RKGLEKKRGK MEKTISLEVL QQYFAGSLKD AAKNIGVCPT TLKRICRQHG ISRWPSRKIN 420 KVNRSLKKLQ GVIESVKGVG AFKIGNLSTG LVSAATVPNT SSVHGKSSPA VVQGAANHDL 480 DMVPPPSNEE VIGIKTSLPG KDCIMPEDFS SSQCQVIATL GTSLSSRLQS IKPGSTHIFQ 540 ETYSVGHAVH VKDVTLDENT NGNLHRVENG HVSYVHGATN GISESRNSES PQESIRTPSS 600 QASHPDLCQI YLNSIEDHAG PPTITAFSRP PASQCHGGGE NLMSQLEFIN NGETSLHKRQ 660 ATSSILKNTH SETAVNCKRK KLPVESSSDQ KPTDFSGQGE CLAEAIQSNS RNLSPQHRCD 720 SRILNLAGLQ RDRIIQEGNK STIFKVTYKQ DTVRFRLPLN AGVSELHDEV TKRFKLEAGT 780 FDLKYLDDDH EWVLLACDAD LQECIGILNL SGGKAIKLVV YDMSSNVGSS CESSGEL

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence Send to blast

XGVGVVELVM TAQKINYAPE VEKVCRALQA VNLRSSEILD HPQVQFLRHI NCHWLRLGFH  60
AGIETSSLPG VARRKIVRVL MEVAWDKSXM STIDSAFYVI DAHMWGFRDA CTEHHLQKGQ  120
GLPGKAFASN QPSFSNDISS FSKTEYPLVH YARLFNLAAA VAIRLRSTHT GNDDYILEFF  180
LPTDCKDSQN LQMLLKSVSV TMRHVCQSLR MLTDKELEDE KLLEVSKEFE SFDCQNEFPE  240
DGNGQIVIIF QGYLQNCKFL QGAEFVQCQE RKQIVRQDSF QQALQAGSEG DQNEIQMVQH  300
PITSLPFVSC QKQQPELEGS NLSDLKHHRH ESAQINKEIS AVLANDDILC SGSLQEHTNI  360
RKGLEKKRGK MEKTISLEVL QQYFAGSLKD AAKNIGVCPT TLKRICRQHG ISRWPSRKIN  420
KVNRSLKKLQ GVIESVKGVG AFKIGNLSTG LVSAATVPNT SSVHGKSSPA VVQGAANHDL  480
DMVPPPSNEE VIGIKTSLPG KDCIMPEDFS SSQCQVIATL GTSLSSRLQS IKPGSTHIFQ  540
ETYSVGHAVH VKDVTLDENT NGNLHRVENG HVSYVHGATN GISESRNSES PQESIRTPSS  600
QASHPDLCQI YLNSIEDHAG PPTITAFSRP PASQCHGGGE NLMSQLEFIN NGETSLHKRQ  660
ATSSILKNTH SETAVNCKRK KLPVESSSDQ KPTDFSGQGE CLAEAIQSNS RNLSPQHRCD  720
SRILNLAGLQ RDRIIQEGNK STIFKVTYKQ DTVRFRLPLN AGVSELHDEV TKRFKLEAGT  780
FDLKYLDDDH EWVLLACDAD LQECIGILNL SGGKAIKLVV YDMSSNVGSS CESSGEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006844913.1	1e-121	protein NLP6
Refseq	XP_020523225.1	1e-121	protein NLP6
TrEMBL	D5A7X9	0.0	D5A7X9_PICSI; Uncharacterized protein
STRING	ERN06588	1e-120	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	6e-70	Nin-like family protein