PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011909
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TALE
Protein Properties Length: 441aa    MW: 48737.1 Da    PI: 6.5131
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55421613PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-14744PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.4e-073904232154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp+++e+++L +++gL+ +q+ +WF N+R +
  Psi011909 390 KWPYPTEDEKARLVQETGLQLKQINNWFINQRKR 423
                469*****************************87 PP
2ELK25.33.5e-09344365122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK  L+++Y+ ++ ++++E++
  Psi011909 344 ELKVDLKQGYRAKIADVREEIL 365
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.9E-18176220IPR005540KNOX1
PfamPF037902.5E-17177219IPR005540KNOX1
SMARTSM012561.9E-16231286IPR005541KNOX2
PfamPF037919.1E-14235285IPR005541KNOX2
PROSITE profilePS512139.271344364IPR005539ELK domain
PROSITE profilePS5007111.661364427IPR001356Homeobox domain
SMARTSM003898.6E-11366431IPR001356Homeobox domain
SuperFamilySSF466898.13E-16366430IPR009057Homeodomain-like
CDDcd000869.42E-12367428No hitNo description
Gene3DG3DSA:1.10.10.602.8E-24371428IPR009057Homeodomain-like
PfamPF059205.8E-17384423IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
XGSESGSASE NNVKLGTPNT WLSRAVSGQH RQQQQQYVER GVEEGRKWCG CVPGSRDCIH  60
CSFLKLQNPA SAGSSSAAAN ALSSRWLMPG PLLNDKIEEG REGVELLGGE IPGESIMALS  120
AQFKTTGSAA SERGFLDLHS ADAVNSNREP VNSGGAGRDR DGGEEADDHA ALWQSARIKA  180
DIVSHPLYDQ LLSAHLECLR IATPKDQHSR IDAQLAQSQH VVTKYSVLGN DNILVSDKKE  240
LDQFMTQYVL LLCSFKEQLQ YHVHVHVMEA VRACIDLQHS LLTLTGVSPG EGTGATMSDD  300
EDDNADSDTD LYDGGLDGGQ DMVGLGPLIP TESERSLMER VRQELKVDLK QGYRAKIADV  360
REEILRKRRA GKLPGDTTSR LKAWWQSHSK WPYPTEDEKA RLVQETGLQL KQINNWFINQ  420
RKRNWHSNPS SSTTLKSKRK R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A8e-13367431872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1420440RKRNWHSNPSSSTTLKSKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862211.11e-155homeobox protein knotted-1-like 2
SwissprotP480001e-152KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLD5A9W30.0D5A9W3_PICSI; Uncharacterized protein
STRINGXP_010265705.11e-153(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-131KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]