PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi011849 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||||||
Protein Properties | Length: 334aa MW: 35579.4 Da PI: 4.401 | ||||||||||||
Description | C2H2 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 308 | 331 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ C++ F++ L +H H Psi011849 308 FNCQSCSRDFTSEGALSSHKAAkH 331 78*****************87666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03066 | 9.0E-7 | 3 | 185 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 308 | 334 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 310 | 331 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MEFWGVEVKP GEALACDPGD EKYLHMSQAA IGDKEGAKEN ERVSLYVHVD GKKFVLGTLS 60 RGKCDQIGLD LVFEKEFKLS HTSQSGSVFF SGYTTLDHEA LDGFPDDEDE SSEDEEEEIA 120 QAMALAAKEN GGKPGAKPVK PESKSPATNK AAAKGKPEVK PPAKKQEDDS DEDDDDDDDD 180 EDMEDVSESD DGDEEDDSDE ESDDDDEEDE ETPKPAAGKK RPMPDSVTKS PSTDKKAKIS 240 TPAGGQKPGA DKGKKTEHVA TPYPKQGGKG PASGVKGKET PLGSKHQTPG SKGKNVSTPE 300 SGKKSGQFNC QSCSRDFTSE GALSSHKAAK HGGK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.9958 | 0.0 | shoot |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LKQ7 | 0.0 | B8LKQ7_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 2e-25 | histone deacetylase 2C |