PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi011825 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||||||
Protein Properties | Length: 202aa MW: 22636.7 Da PI: 9.477 | ||||||||||||
Description | C2H2 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 41 | 63 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C +C+++F++ +k H+++ H Psi011825 41 QCMYCDRTFKQDGRYKEHLKNkH 63 7*******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1050.10 | 3.6E-4 | 11 | 70 | IPR026939 | At2g23090-like |
SMART | SM00355 | 0.0079 | 40 | 63 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.452 | 40 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 63 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF54768 | 6.12E-11 | 101 | 177 | No hit | No description |
Gene3D | G3DSA:3.30.160.20 | 1.6E-6 | 105 | 140 | IPR014720 | Double-stranded RNA-binding domain |
CDD | cd00048 | 3.13E-7 | 106 | 174 | No hit | No description |
Pfam | PF00035 | 2.2E-5 | 107 | 174 | IPR014720 | Double-stranded RNA-binding domain |
SMART | SM00358 | 4.5E-4 | 107 | 178 | IPR014720 | Double-stranded RNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MNSKAKSKQP ASSRHVYKSG AAGCGGKASA VNPKNSGQVI QCMYCDRTFK QDGRYKEHLK 60 NKHANDDLEQ AQLINLHGTS SALESVGDVA LISTQGPSQS SYPVKTPKSL LHEWCQKNKK 120 PAPRFKHVEV EGGFHCRVVL PDPKKSEADV ILWYNEKAVA TAQEAQHHAS VMALYYVMGD 180 RRLDRILPYE YREQWLQLER AA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.14433 | 0.0 | shoot |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024388808.1 | 2e-64 | DExH-box ATP-dependent RNA helicase DExH1-like isoform X1 | ||||
TrEMBL | A0A176W7Y6 | 5e-65 | A0A176W7Y6_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6WJJ1 | 5e-65 | A0A2R6WJJ1_MARPO; Uncharacterized protein | ||||
STRING | PP1S11_19V6.1 | 7e-64 | (Physcomitrella patens) |