PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011825
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 202aa    MW: 22636.7 Da    PI: 9.477
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S38836427PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-9367PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000114163223
               EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
               +C +C+++F++   +k H+++ H
  Psi011825 41 QCMYCDRTFKQDGRYKEHLKNkH 63
               7*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1050.103.6E-41170IPR026939At2g23090-like
SMARTSM003550.00794063IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4524068IPR007087Zinc finger, C2H2
PROSITE patternPS0002804263IPR007087Zinc finger, C2H2
SuperFamilySSF547686.12E-11101177No hitNo description
Gene3DG3DSA:3.30.160.201.6E-6105140IPR014720Double-stranded RNA-binding domain
CDDcd000483.13E-7106174No hitNo description
PfamPF000352.2E-5107174IPR014720Double-stranded RNA-binding domain
SMARTSM003584.5E-4107178IPR014720Double-stranded RNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MNSKAKSKQP ASSRHVYKSG AAGCGGKASA VNPKNSGQVI QCMYCDRTFK QDGRYKEHLK  60
NKHANDDLEQ AQLINLHGTS SALESVGDVA LISTQGPSQS SYPVKTPKSL LHEWCQKNKK  120
PAPRFKHVEV EGGFHCRVVL PDPKKSEADV ILWYNEKAVA TAQEAQHHAS VMALYYVMGD  180
RRLDRILPYE YREQWLQLER AA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.144330.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388808.12e-64DExH-box ATP-dependent RNA helicase DExH1-like isoform X1
TrEMBLA0A176W7Y65e-65A0A176W7Y6_MARPO; Uncharacterized protein
TrEMBLA0A2R6WJJ15e-65A0A2R6WJJ1_MARPO; Uncharacterized protein
STRINGPP1S11_19V6.17e-64(Physcomitrella patens)