PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011812
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 426aa    MW: 46124 Da    PI: 4.5904
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41646540PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-2325PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-05400420121
                EEETTTTEEESSHHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                ++C+ C++ F + s L++H  
  Psi011812 400 HVCNTCTRNFATESALTQHNA 420
                79*****************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525406.35E-12249IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.8E-14249IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF000252.8E-17248IPR006689Small GTPase superfamily, ARF/SAR type
SMARTSM001771.4E-62178No hitNo description
Gene3DG3DSA:2.60.120.3406.0E-494169IPR024057Nucleoplasmin core domain
PROSITE profilePS5015710.616400426IPR007087Zinc finger, C2H2
PROSITE patternPS000280402423IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005525Molecular FunctionGTP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
XKKEMRILMV GLDAAGKTTI LYKLKLGEIV TTIPTIGFNV ETVPXEGLVI VCCVLCSIEL  60
ALQYNLLQRI LLMKMEFWGV EVKPGEVLCC DPGDDKYLHL SQAALGEIQN AKENERVLLN  120
VHDDNKKIVL GALTYGKCDQ FSLDIMFSKP FKLSHSCTTG SVFFIGYTTV VEDVDGGMGG  180
YEDSDSDSDD DRQAQALMRR VKENGQKEAR LAKPELMKDG VKQLKPESVL IDKAAAKAKP  240
GERKSLPGKK PEEKEESSED DDEEDDDDDV DDDDDEDGEG MEGSSDDEDE SDEEEGDSDD  300
ESDEDKNRKM PKVESSGKKR PLPDSSIKSP GTDKKAKVTP GGAQNQGTDG GKKGGPKISV  360
SKEQIPSNKG QTPKAKGGVG AKESPKPSTT PGSGKKIGQH VCNTCTRNFA TESALTQHNA  420
AKHGGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3aq4_A3e-192431859ADP-ribosylation factor 1
3aq4_B3e-192431859ADP-ribosylation factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.32730.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P2L80.0A9P2L8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.26e-21histone deacetylase 3