PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011557
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 289aa    MW: 31296.6 Da    PI: 5.9465
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55421472PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.2e-11557148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                     +++WT eE+  l  +v+++G+g W tI +          R+  ++k++w++++
        Psi011557  5 KQKWTSEEEGALRAGVEKYGSGKWQTILKDPEfavclASRSNVDLKDKWRNLM 57
                     79*************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.197161IPR017930Myb domain
SuperFamilySSF466896.36E-16258IPR009057Homeodomain-like
SMARTSM007178.5E-6459IPR001005SANT/Myb domain
PfamPF002493.0E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-14557IPR009057Homeodomain-like
CDDcd116604.50E-21657No hitNo description
SMARTSM005267.8E-12119187IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.03E-13123197IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.3E-12123196IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.414124192IPR005818Linker histone H1/H5, domain H15
PfamPF005386.9E-9128190IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGAPKQKWTS EEEGALRAGV EKYGSGKWQT ILKDPEFAVC LASRSNVDLK DKWRNLMSVT  60
AGGQGSKTPR VKSIAAVPLS SVSPLSPTAP AAGMLVKSEA TIPSADIVIY SPKSISASAR  120
NHSPRCDYDD MILEALTALR DPNGIDVTTI ASFMEERHQL PPSFRRTLGS KLKRLVSQEK  180
IIRIRNSYKL KDMAEPRAAV LGPRNSADGL KQLWYNPMDA ASLETINQAS MAAAMKMAEA  240
DAMAASAEEA AREAEYDTRL AEEADIFLKA VSEVFGQFSP PDDADGFSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AA990.0D5AA99_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.24e-43MYB_related family protein