PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011525
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 394aa    MW: 43941.8 Da    PI: 9.723
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55422215PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06339360527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 Cr+f++   C + ++Ck+aH++
  Psi011525 339 VCRDFLK-NKCARNSSCKYAHPE 360
                6******.*************96 PP
2zf-CCCH17.95.4e-06372391526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 Cr+f+r G Ck+ ++C+F H+
  Psi011525 372 VCRDFQR-GKCKR-ESCRFYHS 391
                7******.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.325480IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3055481IPR000571Zinc finger, CCCH-type
PfamPF146082.65879No hitNo description
SMARTSM003560.07187113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.66287114IPR000571Zinc finger, CCCH-type
PfamPF146082.7101112No hitNo description
SMARTSM003560.002170197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948170198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001174196IPR000571Zinc finger, CCCH-type
PfamPF146080.087175195No hitNo description
SMARTSM003563.2204228IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.385208229IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017334360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244334361IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4338360IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-4339360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.558367393IPR000571Zinc finger, CCCH-type
SMARTSM003560.0049368392IPR000571Zinc finger, CCCH-type
PfamPF146080.42373390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAGDKRQRSR SKSDSRSPSP TPTTSKSLDR DSPAVKATPS ENAAERRAGK KNHLTVEICK  60
DFFKGRCKRL PSDCKYAHPV STVAVEENKV TVCFDSLRDR CSRGSTCRYY HPSPAIRVSM  120
QEAAGIRPSP VPLGHQVDVI RPSNIFLGPR GPPHPLPVLR SPSSVKNMTK PLVEICRDFV  180
RGRCTREADE CRYAHHAPTA GEGDYVIVCS DHLRGKCERD SCRYFHAPEN LRSRIRDGAL  240
GPAATLNSAH SNRGMDAAHA FPSSFYDQQV LKRMRTGDYA GDPHSWGITQ QSGAPNFHAP  300
SMVGPSLIRP PLPLLQSSTL VPPPHLQSLE VNDEDRLQVC RDFLKNKCAR NSSCKYAHPE  360
PHTKVVDNYV TVCRDFQRGK CKRESCRFYH SSKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3d2n_A6e-1554121773Muscleblind-like protein 1
5u6h_A8e-15541211480Muscleblind-like protein 1
5u9b_A8e-15541211480Muscleblind-like protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
149KRQRSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A8990.0D5A899_PICSI; Uncharacterized protein