PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi011503 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | TALE | ||||||||||||
Protein Properties | Length: 207aa MW: 23765.2 Da PI: 6.5239 | ||||||||||||
Description | TALE family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.6 | 8.8e-08 | 156 | 189 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++e+++L +++gL+ +q+ +WF N+R + Psi011503 156 KWPYPTEDEKTRLVQETGLQLKQINNWFINQRKR 189 569*****************************87 PP | |||||||
2 | ELK | 31.8 | 3.2e-11 | 110 | 131 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y++++ ++++E++ Psi011503 110 ELKHELKQGYRSRIEDIREEIL 131 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 1.5E-20 | 1 | 52 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.2E-16 | 2 | 51 | IPR005541 | KNOX2 |
Pfam | PF03789 | 3.1E-5 | 110 | 131 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.301 | 110 | 130 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0016 | 110 | 131 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.742 | 130 | 193 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-17 | 132 | 197 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.7E-11 | 132 | 197 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.50E-10 | 133 | 192 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 137 | 194 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.7E-18 | 150 | 189 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
XGEKEELDRF LAQYVLLLSS FKEQLQQHVR VHAMEAVMAC WELEQSLHTL TGVSPGEGTG 60 ATMSDDEDDQ ADSDTNLFDL GLDGQDGVGS FGPLIPTGNE RSLMERVRQE LKHELKQGYR 120 SRIEDIREEI LRKRRAGKLP GDTTSVLKNW WQAHSKWPYP TEDEKTRLVQ ETGLQLKQIN 180 NWFINQRKRN WHSNPSSSSA SNAKRKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-14 | 133 | 197 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 206 | RKRNWHSNPSSSSASNAKRKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021739258.1 | 1e-124 | homeobox protein knotted-1-like 3 isoform X1 | ||||
Refseq | XP_021739266.1 | 1e-124 | homeobox protein knotted-1-like 3 isoform X2 | ||||
Swissprot | P48000 | 1e-118 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A3G6J9M7 | 1e-147 | A0A3G6J9M7_PINTA; Homeobox protein knotted-1-like 3 | ||||
STRING | XP_007136985.1 | 1e-123 | (Phaseolus vulgaris) | ||||
STRING | GSMUA_Achr7P05170_001 | 1e-123 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-108 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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