PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Psi011469 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | HB-other | ||||||||
Protein Properties | Length: 235aa MW: 26408.8 Da PI: 8.1325 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 18 | 5.1e-06 | 16 | 75 | 9 | 56 |
HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 +++++e+e++ e p ++++ LA+k ++ +qV +WFqNrR +k Psi011469 16 PQEVQEMEKFLEDgkGAVPPRDTISSLAEKFsaaperagkiLVQWKQVWTWFQNRRHAQK 75 667777777777433677888888888888888888888778999***********8877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.8E-8 | 13 | 78 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-5 | 13 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.778 | 13 | 77 | IPR001356 | Homeobox domain |
Pfam | PF16719 | 3.4E-39 | 115 | 232 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGRPPASGAP VFRFFPQEVQ EMEKFLEDGK GAVPPRDTIS SLAEKFSAAP ERAGKILVQW 60 KQVWTWFQNR RHAQKAKGTK VPGNTAPSPR DDSGAKRVVT NSAAVPSGRN VLVASEMEFE 120 AKSARDGAWY DVASFVTHRM FESGDPEVRV RFAGFGAEED EWVNVKKCVR QRSLPCEASE 180 CVVMLSGDLV LCFQEGKEQA LYFDAHVLDA QRRRHDARGC RCRFLVRYDH DQSEV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 5e-44 | 114 | 234 | 1 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 5e-44 | 114 | 234 | 1 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 5e-44 | 114 | 234 | 1 | 121 | SHH1 SAWADEE |
4iur_B | 5e-44 | 114 | 234 | 1 | 121 | SHH1 SAWADEE |
4iut_A | 5e-44 | 114 | 234 | 1 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 5e-44 | 114 | 234 | 1 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 5e-44 | 114 | 234 | 1 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 5e-44 | 114 | 234 | 1 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 5e-44 | 114 | 234 | 1 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 5e-44 | 114 | 234 | 1 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010275167.1 | 1e-124 | PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 | ||||
Refseq | XP_010275168.1 | 1e-124 | PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 | ||||
Swissprot | Q8RWJ7 | 1e-103 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | D5ACD8 | 1e-173 | D5ACD8_PICSI; Uncharacterized protein | ||||
STRING | XP_010275166.1 | 1e-123 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.3 | 3e-93 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |