PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011455
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 393aa    MW: 43780.1 Da    PI: 4.5878
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41648654PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-9602PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.5e-2058106355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+G+r+++ +g+W+AeIrdp++    +r++lg+f taeeAa+a++aa++k++g
  Psi011455  58 YRGIRQRP-WGKWAAEIRDPRK---GARVWLGTFNTAEEAARAYDAAARKIRG 106
                9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.99957114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-3257115IPR001471AP2/ERF domain
SMARTSM003801.2E-3657120IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2257115IPR016177DNA-binding domain
PfamPF008475.4E-1458106IPR001471AP2/ERF domain
CDDcd000181.76E-1958113No hitNo description
PRINTSPR003679.4E-125869IPR001471AP2/ERF domain
PRINTSPR003679.4E-128096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAHFDKFSEF INGGAPVETF DVSVNVDDDD EDFDDDDFLD FDESYQNKSA GRKRKNLYRG  60
IRQRPWGKWA AEIRDPRKGA RVWLGTFNTA EEAARAYDAA ARKIRGKKAK VNFVDEPPPI  120
KKETNNGKGS RKESSKKIKS CTTPKADHFQ GFKMANPSNT HLNFNQKSPN PSFDDLGFLN  180
SESQLHSICN RNFATKQSSC ALPAYSTDFS DFDESEVENL VPQPASFEPM KNIHKRKGFD  240
YFDSDTSSVS VDRSHFSWIP EVKTPEISSV PKAEAESNQC NFADISTPVA TSVSVGSPEV  300
VLSPFNNGLN KSPSVEDVAS EKSPKLEESS QLEISEDLPS LESYPWLFQL PYFEGNLDQS  360
LQGVGIGEAS FPDGENALQL WNFDAVPISD SAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2158113359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.19920.0needle| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NWS10.0A9NWS1_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.11e-20related to AP2 2