PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi010992
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 474aa    MW: 52557.8 Da    PI: 7.09
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55421987PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-25528PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.56e-1250135281
   trihelix   2 WtkqevlaLiearremeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                W++ e  aL+ a+r+++ +l ++        k++  +W ev + +   g+ r+pk+ + kw+nl + +k+i++++++   ++ s + +
  Psi010992  50 WQDAEMDALVSAYRQIHLKLMSSgnkgrhifKSANDKWTEVRNLLLTVGVDRQPKEIERKWSNLLTAFKQIADWNRQA--GQPSYWEL 135
                **************8888877653333444469*******************************************95..55555654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.00542114IPR017877Myb-like domain
PfamPF138372.5E-950137No hitNo description
Gene3DG3DSA:3.40.50.6201.9E-7231265IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF530982.96E-19256320IPR012337Ribonuclease H-like domain
PfamPF056996.2E-13257318IPR008906HAT, C-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAMTTSRGGG GASLVDGGSG EGEAAAETED IEKLEENRDH GGKKKRAELW QDAEMDALVS  60
AYRQIHLKLM SSGNKGRHIF KSANDKWTEV RNLLLTVGVD RQPKEIERKW SNLLTAFKQI  120
ADWNRQAGQP SYWELDEALK REKTKAKELP ASFRIQMFES MAEFLGDTGG KKSRQSNQSN  180
APPTFYPSTS DNSDCCGTAA ANSGSMDVPL PLEKISCQLN RKCATDPLEQ KRTQVVLLLP  240
GSFNPPTYMH LRMFDTWWEN YGATTPILQK MAIRVLSQTC SSSGCERNWS VFEKIHTKKR  300
NRLDTSCLND LVYVHYNLRL WVKQLEIKID ARAISLDEID TTAAWRVEVE EPVAETALDW  360
LEDSGDDHGI FEDLDHDVSE DIQFHAESAS VPPAERESQS EGDRPSGSTS SRPPLPVPSS  420
RGHLSRGSST SSRGRLTPVR GAHASRAPTP AARGKAVSTA ITFARKKSRG NPIP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A8W40.0D5A8W4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.19e-07Trihelix family protein