PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Psi010915 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 81aa MW: 9338.21 Da PI: 4.2076 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.8 | 3.8e-11 | 32 | 70 | 5 | 45 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++E++l+++++k+lG + W++Ia +++ Rt +++ +w Psi010915 32 SADEEDLIIRLHKLLGDR-WALIAGRLP-WRTTEEIEKYWK 70 799*************99.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.135 | 23 | 76 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-7 | 27 | 75 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.28E-8 | 27 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-10 | 32 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.07E-7 | 32 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-12 | 32 | 70 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MDVQDLQQQS SEGESDSQGG RSRQGLCDSD ISADEEDLII RLHKLLGDRW ALIAGRLPWR 60 TTEEIEKYWK MRSQEIDQSS D |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Highly expressed from the very early stages of embryogenesis to the globular stage, decreases rapidly from the late heart-torpedo stage and did not persist after the completion of embryogenesis. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at a high level in immature siliques and at a lower level in flowers. Undetected in young seedlings, roots, leaves and inflorescence stems. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009607344.1 | 2e-17 | PREDICTED: MYB-like transcription factor ETC1 | ||||
Refseq | XP_016481564.1 | 2e-17 | PREDICTED: MYB-like transcription factor ETC1 | ||||
Swissprot | Q9FJA2 | 6e-14 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A9NQX0 | 8e-50 | A9NQX0_PICSI; Uncharacterized protein | ||||
STRING | XP_009607344.1 | 7e-17 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01060.1 | 1e-16 | CAPRICE-like MYB3 |