PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi010203

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 141aa MW: 15879.6 Da PI: 7.1266

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S37594566	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	33.4	1.3e-10	2	40	91	128
NAM 91 evlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +vl+ +g ++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Psi010203 2 PVLV-NGLQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 40 5666.78899*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-13	1	59	IPR003441	NAC domain
PROSITE profile	PS51005	16.536	1	59	IPR003441	NAC domain
Pfam	PF02365	3.2E-4	11	40	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
RPVLVNGLQK GCKKILVLYT NFGKHRKPEK TNWVMHQYHL GSQEEEKEGE LVVSKVFYQT 60 QPRQCNWEKA TDAGDACKAG ITEATQVPER FTAGENVSST DRHIYSAYDP LEQQAKVTHS 120 SHNLSLAQSR SESSDQVSNS E

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010244407.1	9e-40	PREDICTED: uncharacterized protein LOC104588253 isoform X1
Refseq	XP_010244410.1	9e-40	PREDICTED: uncharacterized protein LOC104588253 isoform X1
Refseq	XP_013609789.1	9e-40	PREDICTED: POU domain, class 4, transcription factor 2-like isoform X3
Refseq	XP_013670821.1	8e-40	POU domain, class 4, transcription factor 2-like isoform X3
Refseq	XP_013692587.1	9e-40	uncharacterized protein LOC106396501 isoform X3
Refseq	XP_016689911.1	6e-40	PREDICTED: uncharacterized protein LOC107907169
Swissprot	Q9M0F8	2e-40	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	E0ZFA1	6e-51	E0ZFA1_PICSI; No apical meristem-like protein (Fragment)
STRING	Cagra.0495s0057.1.p	2e-39	(Capsella grandiflora)
STRING	XP_010244406.1	3e-39	(Nelumbo nucifera)
STRING	Traes_3DS_E799374CA.1	2e-41	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	9e-43	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]