PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Psi010097 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | WOX | ||||||||
Protein Properties | Length: 148aa MW: 16461.1 Da PI: 6.9448 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 33.3 | 8.2e-11 | 15 | 58 | 19 | 57 |
HHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 19 Fek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ n++p+ e+++ +A++l + +V++WF+Nr+a+e++ Psi010097 15 YNGgNQTPKPEQIQVIAAELrrhgTVAGINVFYWFKNRKARERR 58 66559******************99*****************97 PP | |||||||
2 | Wus_type_Homeobox | 67.1 | 3.2e-22 | 13 | 59 | 18 | 64 |
Wus_type_Homeobox 18 elyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++y+ G +tP+ e+iq i+aeL+++G + + NVfyWF+NrkaRer+k Psi010097 13 NIYNGGNQTPKPEQIQVIAAELRRHGTVAGINVFYWFKNRKARERRK 59 79********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 1.6E-8 | 15 | 58 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-4 | 19 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.55E-7 | 19 | 61 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MEPHKRAAQN PGNIYNGGNQ TPKPEQIQVI AAELRRHGTV AGINVFYWFK NRKARERRKT 60 RSILEGHAAA NSSGFSSFQP NDNFSSRLLN SNGEEDESKF SNCIEVYDFL LNSDAAAAEA 120 GVEVESSLQT LQLFPPSCNE SIAYRNHS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5ADI8 | 1e-94 | D5ADI8_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 1e-14 | WUSCHEL related homeobox 1 |