PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi009852
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YB
Protein Properties Length: 160aa    MW: 18314.8 Da    PI: 5.3665
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55422120PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB73.72.8e-23896391
      NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91
               ++d  lP a +++i+k++lPa+ ++++da++++ ec +efi +++se++d c +e+++ti+++ +l +l  lGf  y+ ++k+  +++r
  Psi009852  8 KEDVSLPKATMTKIIKEMLPAHVRVTRDAQDLLVECCVEFINLISSESNDICYKEEKRTIAPEHVLESLKILGFGSYIREVKAAYEQHR 96
               57899****************************************************************************99877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-375141IPR009072Histone-fold
SuperFamilySSF471132.51E-329138IPR009072Histone-fold
PfamPF008081.4E-191273IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEIVGKAKED VSLPKATMTK IIKEMLPAHV RVTRDAQDLL VECCVEFINL ISSESNDICY  60
KEEKRTIAPE HVLESLKILG FGSYIREVKA AYEQHRIENW DCPRAGTRWS KNRLEMTEEE  120
ALLEQQRMFA EARARMNSGN NNLPGQLQSQ SQSQSQSQSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B1e-34913312133Transcription Regulator NC2 beta chain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012832678.13e-75PREDICTED: protein Dr1 homolog
SwissprotP495921e-69NC2B_ARATH; Protein Dr1 homolog
TrEMBLD5A8I51e-115D5A8I5_PICSI; Uncharacterized protein
STRINGMigut.D01587.1.p1e-74(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.44e-72nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]