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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Psi009535 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 175aa MW: 19462.5 Da PI: 5.7849 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 38.6 | 2.4e-12 | 82 | 160 | 20 | 99 |
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99
++P ar++++++++ d++ s ea l+ ka e f+ ++ + s+ h e +++ l +++v++ + ++fl d vp++
Psi009535 82 AFPTARVRRVIRSEGDIRT-SVEATFLINKAAERFLEQFVVDSFEHVLEETKNILSYKPFSSTVANQKRYEFLADFVPEK 160
79***************85.99*******************************************************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.20.10 | 1.0E-14 | 83 | 159 | IPR009072 | Histone-fold |
| Pfam | PF00808 | 1.6E-6 | 83 | 137 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
| SuperFamily | SSF47113 | 5.76E-12 | 98 | 160 | IPR009072 | Histone-fold |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0046982 | Molecular Function | protein heterodimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 175 aa Download sequence Send to blast |
MKAANTPKSD TPKSDSSAQS SSDFSEEQEN ADEKTTPTTP TKRPTDNGAY SSLNIEEAET 60 PSRPIRISHH KSPRPETPTT VAFPTARVRR VIRSEGDIRT SVEATFLINK AAERFLEQFV 120 VDSFEHVLEE TKNILSYKPF SSTVANQKRY EFLADFVPEK VKAADALAQR ASAEI |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Psi.11652 | 0.0 | shoot | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | D5ACA9 | 1e-122 | D5ACA9_PICSI; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G07980.1 | 7e-21 | nuclear factor Y, subunit C10 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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