PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Psi009297 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 20585 Da PI: 4.4222 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.6 | 8.4e-10 | 6 | 41 | 17 | 55 |
AP2 17 AeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 AeIr p++ r +++lg++ tae+Aa+a++aa +l+g Psi009297 6 AEIRMPKT---REKIWLGSYKTAEQAARAYDAAVYCLRG 41 89999865...49************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.751 | 1 | 49 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.60E-19 | 2 | 51 | No hit | No description |
SMART | SM00380 | 4.1E-14 | 2 | 55 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-19 | 4 | 51 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-12 | 6 | 51 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MGELGAEIRM PKTREKIWLG SYKTAEQAAR AYDAAVYCLR GPNAKFNFPD SVYSIPSVSS 60 LTRQQIQVAA AKYALGEIPS TSPSVQNIKN NNQKAREKPA SQSQPSLVSE TAWPCDSQQI 120 SKAQDLGFWE TPFYGNCGLN LEKIPSIEEA SVWEFIPTSQ EEQQEGCIFS DPTDLWNFET 180 FELF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5ADJ9 | 1e-128 | D5ADJ9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 3e-28 | ERF family protein |