PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi008424
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 221aa    MW: 25209 Da    PI: 5.7061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-23402PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.5e-162776255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++kG+r +k +g+WvAeIr p++   r + +lg++ +a++Aa+a++aa  +l+g
  Psi008424 27 QFKGIRLRK-WGSWVAEIRMPKS---REKLWLGSYTSAQQAARAYDAAVYCLRG 76
               69*****99.**********954...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.4E-272685IPR001471AP2/ERF domain
SMARTSM003803.1E-272790IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-172786IPR016177DNA-binding domain
PROSITE profilePS5103220.3892784IPR001471AP2/ERF domain
CDDcd000189.75E-232786No hitNo description
PRINTSPR003676.4E-92839IPR001471AP2/ERF domain
PfamPF008475.0E-92876IPR001471AP2/ERF domain
PRINTSPR003676.4E-96686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
XMEKPSPREL EDAHSREDKD RGQNCRQFKG IRLRKWGSWV AEIRMPKSRE KLWLGSYTSA  60
QQAARAYDAA VYCLRGPAAK FNFPNSVPSI PSASFLSRRQ IQLAASKYAL DQLPSSSPSL  120
QNINNKAVEE ATSPPRPAPV SETELWSHSH KRSEERELDL WECLFEGSDS NHDGCLSLNL  180
ERMPSIEEVS ALALIRSTCQ QLEQEEEHMN IFLDPTELWN F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1327851473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ADJ91e-63D5ADJ9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.13e-27ERF family protein