PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Psi008125 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 25208.6 Da PI: 9.5789 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.1 | 3e-20 | 38 | 87 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd ++ + r +lg+f+taeeAa+a++ a+ +l+g Psi008125 38 HFRGVRKRP-WGRYAAEIRDpWK----KVRLWLGTFDTAEEAARAYDTAAISLRG 87 69*******.**********883....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.7E-39 | 38 | 101 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.12E-27 | 38 | 96 | No hit | No description |
PROSITE profile | PS51032 | 23.196 | 38 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-22 | 38 | 97 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-31 | 38 | 95 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-12 | 38 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 39 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
XTPLPPEALL LAGNPFCLRW VMAPSNTGRD DNGERGVHFR GVRKRPWGRY AAEIRDPWKK 60 VRLWLGTFDT AEEAARAYDT AAISLRGPKA KTNFAYSSPS SSSSLHNNQS SSQNSSTVES 120 WPSAAPVTRS GDLELHASFL PRIGVSTGRR GFNGGNPRSE RRRSLSEKNG GRKAEGAEAR 180 TALSDSDSSS SAILDGDAQA PPPPPAAKRP FLLDLNLPPP LDDDDEQPQQ IGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 31 | 94 | 2 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.17610 | 0.0 | needle |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J7H5K8 | 3e-92 | J7H5K8_9SPER; Transcription factor 1 (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 9e-20 | ERF domain protein 12 |