PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Psi007907 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||||||
Family | Trihelix | ||||||||||||
Protein Properties | Length: 246aa MW: 28693 Da PI: 4.8896 | ||||||||||||
Description | Trihelix family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 29.2 | 2.4e-09 | 13 | 92 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ + L+e ++ + ++++lk +W ev+ + ++ ++ ++ +qC+++++ l+k+ykk+++++ + s+++y++ ++ Psi007907 13 WSEAATWILLETWGNKYLQAGKKSLKLEQWFEVATTVsAASKILKTDIQCRNRLDTLKKKYKKERQRSPN------SKWVYYQYMD 92 999**********************************788899**********************99997......489***9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.1E-17 | 10 | 94 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
PGRPEAKGSR DDWSEAATWI LLETWGNKYL QAGKKSLKLE QWFEVATTVS AASKILKTDI 60 QCRNRLDTLK KKYKKERQRS PNSKWVYYQY MDALLNSSPW QAGLPYGMDA GKFVSQVPLR 120 PKVCSNHSRF KEVWDGPGDS PSEEEEEEEE DEEDEEADEG RGLKRRKDDE DSFRILADSI 180 HRFGEIYERI ENSKKQQMLD LEKMRMEFDR DLEMQKRRIL EQTQIELAKI RQGSDDIDAS 240 VTNMSG |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 160 | 165 | RGLKRR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002690.1 | 4e-70 | PREDICTED: trihelix transcription factor ASIL1-like | ||||
Refseq | XP_024449469.1 | 4e-70 | trihelix transcription factor ASIL1 | ||||
TrEMBL | B8LRP6 | 1e-109 | B8LRP6_PICSI; Uncharacterized protein | ||||
STRING | POPTR_0001s18000.1 | 1e-69 | (Populus trichocarpa) | ||||
STRING | XP_006427040.1 | 3e-69 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24490.1 | 1e-47 | Trihelix family protein |