PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi007462
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 274aa    MW: 31144.2 Da    PI: 4.9241
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50823421PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.3e-1971124356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+++++ +q++ Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Psi007462  71 KKRRLSVQQVRSLETSFETESKLEPERKMQLAAELGLQPRQVAVWFQNRRARWK 124
                56789************************************************9 PP
2HD-ZIP_I/II128.72.5e-4171161292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kkrrls +qv++LE+sFe+e+kLeperK++la eLglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++y+++++e+++Le +v++L++e+ 
    Psi007462  71 KKRRLSVQQVRSLETSFETESKLEPERKMQLAAELGLQPRQVAVWFQNRRARWKTKQLERDYDDLKQQYEEVVAEKKKLEGQVARLTQEVV 161
                  9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.15E-1961128IPR009057Homeodomain-like
PROSITE profilePS5007116.89266126IPR001356Homeobox domain
SMARTSM003896.0E-1769130IPR001356Homeobox domain
CDDcd000861.06E-1571127No hitNo description
PfamPF000461.3E-1671124IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1973133IPR009057Homeodomain-like
PRINTSPR000313.4E-697106IPR000047Helix-turn-helix motif
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
PRINTSPR000313.4E-6106122IPR000047Helix-turn-helix motif
PfamPF021837.7E-7126158IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSFNFGSGND HAVNGFLHLQ SGLFSRRFHA NGYGHRSGSG FYGSVLYDNP SSSDEVGLCD  60
DEEISGGLHS KKRRLSVQQV RSLETSFETE SKLEPERKMQ LAAELGLQPR QVAVWFQNRR  120
ARWKTKQLER DYDDLKQQYE EVVAEKKKLE GQVARLTQEV VAAKGEKKDQ NTLITAKSEE  180
ENGLQKTTTT TTEEMQSTSP SFCSDADSNR KLLLSSPSCN IQAAACKTDE ENEEENLQAL  240
YSNDFHDQLD MYRYLMAAEE QQHHGPDWLN FENL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.71150.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028229134.14e-38homeobox-leucine zipper protein HAT5-like isoform X1
SwissprotQ8S7W91e-35HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA9NYL70.0A9NYL7_PICSI; Uncharacterized protein
STRINGLPERR03G04660.12e-37(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.16e-37homeobox 3