PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi007272
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 289aa    MW: 32348.4 Da    PI: 4.5976
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-23248PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.35.8e-162576155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               s+y+GV +++ +grW+A+I  +     +k+ +lg+f t eeAa a+++a+ +++g
  Psi007272 25 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFSTQEEAATAYDRAAIEYRG 76
               89****99**********988422...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.20E-262586No hitNo description
SuperFamilySSF541713.92E-182586IPR016177DNA-binding domain
PfamPF008472.1E-112576IPR001471AP2/ERF domain
SMARTSM003808.1E-282690IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-192685IPR001471AP2/ERF domain
PROSITE profilePS5103218.2552684IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
XQSVSKEEYL ASLRRRSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVLGNK YLYLGTFSTQ  60
EEAATAYDRA AIEYRGLNAV TNFDLSRYMS FLRPAKDLIN GDGEDVVVSN EDSGTSLVPG  120
GVSTKSSNDE DNMSSLLQPQ LSWTPPQLEC SNEEKESSSA ADPTDLDHLF AQSSSKFKEI  180
MEIRTSGHQP GEDLHNIETA NFAEDLEMFF NSNNMLGSDA ELSLNVDSPS AMNNMFVQPD  240
HLHLQMPFDM HEICNGEFLD LDHHQHADLE YPLIDPISSF PNFVVRTCS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.98960.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024197176.17e-58AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2P6QU282e-56A0A2P6QU28_ROSCH; Putative transcription factor AP2-EREBP family
STRINGXP_004298061.12e-55(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.24e-33ERF family protein