PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi007251

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 291aa MW: 32841.4 Da PI: 7.833

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S38778960	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.4	4.4e-19	238	291	1	54
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekw 54 rW+k ev+aLi++r+ me r++++ k+plWee+s+ m++ g++rs+k+Ckekw Psi007251 238 RWPKPEVHALIKLRTGMEPRYQDAGPKGPLWEEISAGMARLGYSRSAKRCKEKW 291 8***************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.039	231	291	IPR017877	Myb-like domain
Pfam	PF13837	7.7E-11	237	291	No hit	No description
CDD	cd12203	2.80E-24	237	291	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
XRNNHSHALS SGAGAPVRPQ PPPPIVLTNN NTAGASASAG ELNRNSGAAT NSVVLKQTAD 60 YSAGNLSFSS ESSEDEEYDE QMDSRKRKRG SSTTEKMMLF FEQLIKQVME RQENMQQKFL 120 ETIEKREQDR MIREEAWKRQ EMARLNREHE IMAQERALAA SRDTAFIAFF QKITGQTFQV 180 PVMAPVAQST TTINNTVPLP THETHPVRDA VATHHQRDTT QDVNVDQTEL TFDPNSSRWP 240 KPEVHALIKL RTGMEPRYQD AGPKGPLWEE ISAGMARLGY SRSAKRCKEK W

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029119933.1	1e-75	trihelix transcription factor GTL1 isoform X4
TrEMBL	A0A0D6QXM9	1e-130	A0A0D6QXM9_ARACU; Uncharacterized protein
STRING	GSMUA_Achr2P11910_001	3e-73	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-54	Trihelix family protein