PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi007076
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TCP
Protein Properties Length: 309aa    MW: 34696.8 Da    PI: 9.026
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-26674PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.63.1e-36201293288
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssasnsssg 88 
                +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak++i+elt++         +++++    +++  +++++++++
  Psi007076 201 TGRKDRHSKVYTAKGPRDRRVRLSALTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELTQLpplsalnipNQEPK---AEDEGIKEQAEQEIA 293
                79**************************************************************55555433211111...222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.6E-32201269IPR005333Transcription factor, TCP
PROSITE profilePS5136933.467203261IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAKSLGRTKC KLGYIKFRPI QNIPKLQGNE ILNGVSKEAR LAPNLERKLQ ALDPGRYLNP  60
RKRAVEEARQ ILNIDSSSSS SDQNGDEKSL RRSPEEEEEE EEKHYGSTQD RIHSMSFDDL  120
RSLLVHNTTT TTNPVDSVNI TRSRENASTD VDLARRMCDN KRDSSDQRPP RGRPPGTSIP  180
RQQLPMGEIV EVEGGHIVRS TGRKDRHSKV YTAKGPRDRR VRLSALTAIQ FYDVQDRLGF  240
DRPSKAVDWL IKKAKTSIDE LTQLPPLSAL NIPNQEPKAE DEGIKEQAEQ EIALENEAAA  300
KPGARATDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-21208261154Putative transcription factor PCF6
5zkt_B6e-21208261154Putative transcription factor PCF6
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.38461e-163shoot
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-46TCP family protein