PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi007064

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 311aa MW: 35201.5 Da PI: 7.9609

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S41650807	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	150	169	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Psi007064 150 FSCPVCAKTFNRYNNMQMHM 169 89*****************9 PP
2	zf-C2H2	12.1	0.00062	235	257	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k+F + + ++H +++ Psi007064 235 FMCCKCNKTFAVRGDWRTHEKNC 257 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.98E-5	145	172	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.1E-6	150	169	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.159	150	177	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.14	150	172	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	152	172	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	198	230	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	8.51E-6	217	255	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-4	222	255	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	70	235	255	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
DLTLVSXVAI PCPDSFVGHQ VPSHAANDAN INDQSRVFFQ QLQQPLKGYC ESPPLREELP 60 LLLSLSPPRE KRSGEEKFRS DPEENAMVSL QIGPPNSLSE KSELTLKSTD SSDADKESIV 120 QPRSEGRTRF SESQYWIPTP SQILIGATQF SCPVCAKTFN RYNNMQMHMW GHGSQYRKGP 180 ESLRGTQPTA ILLRLPCYCC TQGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCCKC 240 NKTFAVRGDW RTHEKNCGKL WYCSCGSDFK HKRSLKDHIR AFGQGHAPIA PDSFEDEEDL 300 GSEDEVSVLS H

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246927.1	1e-121	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q8W031	1e-109	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A9NQR7	1e-169	A9NQR7_PICSI; Uncharacterized protein
STRING	XP_010246927.1	1e-120	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-110	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]