PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi006975

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 325aa MW: 36969.6 Da PI: 9.6013

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S41647832	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102	3.5e-32	248	306	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++ +prsYYrCt+++C+vkk+v+r ++dp++v++tYeg H h+ Psi006975 248 LDDGYRWRKYGQKSVKNNLYPRSYYRCTHQTCSVKKQVQRLSRDPEIVVTTYEGIHMHP 306 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.9E-33	233	307	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-28	240	307	IPR003657	WRKY domain
PROSITE profile	PS50811	29.057	243	308	IPR003657	WRKY domain
SMART	SM00774	7.5E-38	248	307	IPR003657	WRKY domain
Pfam	PF03106	9.7E-26	249	306	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
XMSARMKIDS ATRHNANFFQ YSSGGYACPS DDLVFSPNSL VQRPVSWVDT NLMNPDLSST 60 ANSSCFPRIN GGINGLSSSK THSPPAPSHS LTEFMQTQSR AHDQGKNEHV NSMKNIQQQQ 120 QQDQMNQTTG NPNIWKPSWL SQTTTSDKEE AVQRRDFNVP GGFPESNSSG DTQARLSAMR 180 GFTGLEGQYF PAVREEHNKG ISESERLQLG ENDGGNVKDN RSRSRGKLEK RIRRPRYAFQ 240 TRSQVDILDD GYRWRKYGQK SVKNNLYPRS YYRCTHQTCS VKKQVQRLSR DPEIVVTTYE 300 GIHMHPSEKS MESFDHILNQ MQFLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-24	240	305	9	74	Probable WRKY transcription factor 4
2lex_A	1e-24	240	305	9	74	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NZ05	0.0	A9NZ05_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	2e-48	WRKY DNA-binding protein 75