PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006923
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 337aa    MW: 37856.1 Da    PI: 6.284
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41650963PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.1e-14107150855
                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 Er RR++++s f++L +llP++      K +K++i+e+A+ YIk Lq
  Psi006923 107 TERERRKKMRSMFSNLHSLLPHL----PAKADKSTIVEEAISYIKTLQ 150
                6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.00599149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-15103160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14104160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.49E-13104154No hitNo description
SMARTSM003531.3E-9107155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-11107150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
XYNCSDNHLG EQDHEKYKLQ SINIAQDIDS LSNDLQEQYH MEYCNRQESV TEPNLDHDQA  60
SAGCKPREPK SIDHKKSAQA LKLGELGLGN SLMKSIEPED QGIHIWTERE RRKKMRSMFS  120
NLHSLLPHLP AKADKSTIVE EAISYIKTLQ QSLHVLENQR LDKARAASTL EFELSSTFHE  180
MQQQHHVSTA TMRSASEAPA FYHPLTAECS ASSGFEPWIS RQYSRTISTG SPAIDHCFFQ  240
TWSSPNVVLS VCGDDAHMMI CSSPPKQGLL TTIFYTLEKH KVDVVTAHIS SDSCRSMYMI  300
HAQAHAMVNG GDQFLESKAS EEAFRSAAGE LVFYLSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NQC20.0A9NQC2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-45bHLH family protein