PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi006888 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | WRKY | ||||||||||||
Protein Properties | Length: 344aa MW: 37480.4 Da PI: 9.5812 | ||||||||||||
Description | WRKY family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.8 | 7.1e-31 | 273 | 331 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp+v+++tYegeH h+ Psi006888 273 SDEFSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERALDDPNVLIVTYEGEHSHS 331 69************************9888****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.6E-16 | 222 | 270 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 4.2E-32 | 260 | 331 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.251 | 267 | 333 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-26 | 270 | 331 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-37 | 272 | 332 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-26 | 274 | 330 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MAVEMLDSRN FMERDVHQAA SATLESVQNL IQLLSRHREM QDEGESQCGF AAEIAANRFK 60 RVVSMLGTTT GHARFRKAPT GSSVLSPKIC PSFEAGYANI SASSSSSHEA FRDSEGFISP 120 APLNNNTLYR PTPLHVQAPP QSPVMDSTPQ QHKIPLLPMN SDYSFMGSRP FKEPVISSPP 180 ISSTNSFISS LTASDPCDKT SMLVRSLSSP TAVGRPPLSS SKKACIHGKP DDLSGKCNTT 240 GGRCHCSSKR KKSRVKRTIR VPAISAKLAD IPSDEFSWRK YGQKPIKGSP HPRGYYKCST 300 VRGCPARKHV ERALDDPNVL IVTYEGEHSH SHSVSENTGL VLDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-20 | 260 | 330 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5AD76 | 0.0 | D5AD76_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 5e-61 | WRKY DNA-binding protein 7 |