PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi006819

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

GRAS

Protein Properties

Length: 358aa MW: 40988.8 Da PI: 9.1188

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Picea_sitchensis-2751	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	377.1	2.2e-115	2	355	20	374
GRAS 20 aqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdi 119 a+++L++++++as++gd qRla yf+ +L arl++s+ +l+ l++++ s + +e l+a+kl+ ++P+ k+sh+++ q++l+ +ege+r+Hi+Df+i Psi006819 2 ANEILKQIRQHASSYGDGAQRLANYFADGLVARLTGSGGRLFTMLSSNSLS--SAAEILKAYKLYLVATPYKKISHFLTYQTVLNVAEGETRLHIVDFGI 99 99**************************************999888887..599**************************************** PP GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217 s+G+QWp+L+q La+Rp+gpp+lRiTg++ p++g +e++eetg+rL+++A+++gvpfe+++ +a+++e+l++eeL+++++E+l+Vn++++l +llde+ Psi006819 100 SYGFQWPSLIQCLANRPGGPPMLRITGIEFPQPGfrPAERIEETGRRLEDYAKSFGVPFEYQA-IATKWENLDVEELNLRSDEVLVVNCMYRLRHLLDET 198 *****************************9*************************.7******************************* PP GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317 v +es+r+ vL+ ++s++P+v++ + +n++ F +rf eal +ysalfd+le+++pr++ er +E+e+lgrei nvvaceg er er et+++W+ Psi006819 199 VVVESPRNVVLNKIRSMNPRVFIQGVVNGAYNAPFFITRFREALFHYSALFDALETTVPRDHPERLLIEKEMLGREILNVVACEGLERLERPETYKQWQV 298 ************************************************************************************************ PP GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r ++aG+ ++pl+ ++ ++a+ +++++ + + v+e+ ++++lgWk+r L+ +S Wr Psi006819 299 RTQRAGYVQLPLNRTILSKARDKVKTFYHKDFGVDEDGNWMLLGWKGRILYGLSTWR 355 ************************889***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.937	1	335	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.6E-113	2	355	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
XANEILKQIR QHASSYGDGA QRLANYFADG LVARLTGSGG RLFTMLSSNS LSSAAEILKA 60 YKLYLVATPY KKISHFLTYQ TVLNVAEGET RLHIVDFGIS YGFQWPSLIQ CLANRPGGPP 120 MLRITGIEFP QPGFRPAERI EETGRRLEDY AKSFGVPFEY QAIATKWENL DVEELNLRSD 180 EVLVVNCMYR LRHLLDETVV VESPRNVVLN KIRSMNPRVF IQGVVNGAYN APFFITRFRE 240 ALFHYSALFD ALETTVPRDH PERLLIEKEM LGREILNVVA CEGLERLERP ETYKQWQVRT 300 QRAGYVQLPL NRTILSKARD KVKTFYHKDF GVDEDGNWML LGWKGRILYG LSTWRPSA

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

XANEILKQIR QHASSYGDGA QRLANYFADG LVARLTGSGG RLFTMLSSNS LSSAAEILKA  60
YKLYLVATPY KKISHFLTYQ TVLNVAEGET RLHIVDFGIS YGFQWPSLIQ CLANRPGGPP  120
MLRITGIEFP QPGFRPAERI EETGRRLEDY AKSFGVPFEY QAIATKWENL DVEELNLRSD  180
EVLVVNCMYR LRHLLDETVV VESPRNVVLN KIRSMNPRVF IQGVVNGAYN APFFITRFRE  240
ALFHYSALFD ALETTVPRDH PERLLIEKEM LGREILNVVA CEGLERLERP ETYKQWQVRT  300
QRAGYVQLPL NRTILSKARD KVKTFYHKDF GVDEDGNWML LGWKGRILYG LSTWRPSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-56	2	356	38	380	Protein SCARECROW
5b3h_A	9e-57	2	356	37	379	Protein SCARECROW
5b3h_D	9e-57	2	356	37	379	Protein SCARECROW
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006846246.2	0.0	scarecrow-like protein 33
Refseq	XP_020524095.1	0.0	scarecrow-like protein 33
Swissprot	O80933	1e-149	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A3E2G2	0.0	A3E2G2_PINRA; SCARECROW-like protein 1
STRING	ERN07921	0.0	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-152	GRAS family protein