PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006811
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 360aa    MW: 40104.8 Da    PI: 4.5755
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41649122PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.8e-1788140456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                ++++t +q+++Le+ Fe  +++  e++ +LAk lgL+ rq+ vWFqNrRa+ k
  Psi006811  88 KRRLTFQQVKRLEKSFEVANKLEPERKIQLAKALGLQPRQIAVWFQNRRARCK 140
                4578899********************************************99 PP
2HD-ZIP_I/II115.72.7e-3787174289
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  kkrrl+ +qvk LE+sFe  +kLeperK +la++Lglqprq+avWFqnrRAR ktkq+Ekd++aLk++yd lk++ + L +e+++ ++
    Psi006811  87 KKRRLTFQQVKRLEKSFEVANKLEPERKIQLAKALGLQPRQIAVWFQNRRARCKTKQVEKDFDALKQQYDDLKNKYDILLQENKHFKA 174
                  9**********************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1874143IPR009057Homeodomain-like
SMARTSM003891.1E-1585146IPR001356Homeobox domain
CDDcd000863.84E-1687143No hitNo description
PROSITE profilePS5007116.09987142IPR001356Homeobox domain
PfamPF000461.1E-1488140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-1789149IPR009057Homeodomain-like
PRINTSPR000312.4E-5113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000312.4E-5122138IPR000047Helix-turn-helix motif
PfamPF021831.6E-8142175IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSCDGSPYRY ANTAMTTEDY SANVMASMIA SCTSVGVQGA ATLTRCECEN KRKSSMSLSA  60
YSGAMDLSDY DIGEEDGSDD CLHFGGKKRR LTFQQVKRLE KSFEVANKLE PERKIQLAKA  120
LGLQPRQIAV WFQNRRARCK TKQVEKDFDA LKQQYDDLKN KYDILLQENK HFKAERLNRE  180
SGNDDQNRNL SDFDFEIEPQ QNSANSSHKT TDAPMELSVK SKICQKCAEP LGDLYPTTTK  240
EQEGRCCSIM SEAASSIFNI DSPRTIESPP SPPFPQIIAA AAAANSSPEL LVEGSSIGEQ  300
IACGLETLPL GHESNCLPDT LPEVEADQIA SLNQAEETCR NLFYSLDEQG PLMLWDYWPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARCKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.48350.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NVG40.0A9NVG4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.18e-42HD-ZIP family protein