PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006777
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 369aa    MW: 42255.1 Da    PI: 7.4039
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50072525PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-18211PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.41.7e-1795181181
   trihelix   1 rWtkqevlaLiearremeerlrrg......klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                rWt +e+l+Li+a++  ++  + g      k++  +W+  s+++++ g++r+++qC+++w+ ++ +ykki++ e++  se++s +++
  Psi006777  95 RWTVSETLTLINAKQVEKNLPSPGgfmkqtKSAIEKWKCTSAQCHSNGLNRTATQCRDRWDHIQPDYKKIRHYERSIVSEHESYWSM 181
                8**************99998886433333379999******************************************9999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-686163IPR009057Homeodomain-like
PROSITE profilePS500906.43588158IPR017877Myb-like domain
PfamPF138371.7E-1293181No hitNo description
CDDcd122039.58E-1495165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDKHLCCPST ETLYLGPEIF QLEDPHTIED ILPLDNEMLS DSFPDVICTQ VGSQGAYALT  60
IPHNEVTVGE VHDALPLSEV ERTITQKKQP KGRVRWTVSE TLTLINAKQV EKNLPSPGGF  120
MKQTKSAIEK WKCTSAQCHS NGLNRTATQC RDRWDHIQPD YKKIRHYERS IVSEHESYWS  180
MTTKERIDKK LPANFTKEIF DAMEKHFGQN RTIHPGDMVI DTSASNYGAF EQNAASENTP  240
LHKNMKLEMP LENQGDTSID RDSHFTGKKR KVASMTSGIK STLVENNKKI ISNLKLAEQG  300
HLKRHEKYCS MFEQRMEIDE KYLKDHIVSV QRMIYIEEQK VKAQQELITA LNNIGQAMFK  360
ICETMGKKV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.141780.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNP60.0B8LNP6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-22Trihelix family protein