PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006754
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 373aa    MW: 42202.5 Da    PI: 4.6935
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41648976PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-1887140356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++t eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ vWFqNrRa++k
  Psi006754  87 KKRRLTLEQVRALEKNFEIANKLEPEKKMQLAKALGLQPRQIAVWFQNRRARWK 140
                45689************************************************9 PP
2HD-ZIP_I/II127.17.4e-4186176191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ eqv++LE++Fe  +kLepe+K++la++Lglqprq+avWFqnrRAR+ktkqlEkd+++Lk+ ydalk++ ++L +e+++L++ +
    Psi006754  86 EKKRRLTLEQVRALEKNFEIANKLEPEKKMQLAKALGLQPRQIAVWFQNRRARWKTKQLEKDFNVLKQDYDALKQDYDNLMEENNNLQAMV 176
                  69*************************************************************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575134No hitNo description
SuperFamilySSF466892.65E-1978144IPR009057Homeodomain-like
SMARTSM003892.8E-1785146IPR001356Homeobox domain
PROSITE profilePS5007116.7386142IPR001356Homeobox domain
CDDcd000868.86E-1787143No hitNo description
PfamPF000461.5E-1587140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-1989149IPR009057Homeodomain-like
PRINTSPR000312.3E-5113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000312.3E-5122138IPR000047Helix-turn-helix motif
PfamPF021831.3E-12142174IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MACDRSALYT SSVIMNTEDN SSAHAIAAMI ASSCTPPATF QGTRSISVFE TGNERKRPAG  60
NSYSALELSD DIGDEDGSDD CIHLGEKKRR LTLEQVRALE KNFEIANKLE PEKKMQLAKA  120
LGLQPRQIAV WFQNRRARWK TKQLEKDFNV LKQDYDALKQ DYDNLMEENN NLQAMVGNYT  180
LFLFILCMCF GIRYDRIREF GVTPIKMAAL SSELLNFFKT RSIQILSFVF SLLIICDYQI  240
ERMSSKSQSC NDQKFQANSS KLQKDDQDLQ LLMMSATKVD CADKENNNEG PSSIGSEGSS  300
VLDMDSPGTI DSQQNIDSIG FSNVKARDPR LECNFRPKVE ENVSQADEPC NYLFYNNLET  360
GPLLWDYNWS SGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.43390.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NV370.0A9NV37_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.17e-42homeobox 3