PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006717
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 383aa    MW: 43606.2 Da    PI: 7.7086
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41646672PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.5e-2182132256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a++ a++k++g+
  Psi006717  82 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAARAYDDAALKFRGA 132
                7********.**********94....45*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-2382140IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-3382140IPR001471AP2/ERF domain
CDDcd000181.64E-2382140No hitNo description
SMARTSM003802.5E-3782145IPR001471AP2/ERF domain
PfamPF008476.2E-1482131IPR001471AP2/ERF domain
PROSITE profilePS5103225.75282139IPR001471AP2/ERF domain
PRINTSPR003675.8E-128394IPR001471AP2/ERF domain
PRINTSPR003675.8E-12105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MESRTDKLVA GKKRRRDELQ TTSSTMNCVK AEDISGQHST FSQEESSILT PLQHQQRLRE  60
DDLSSKKKDE LQVPQNSSKK RRYRGVRQRP WGKWAAEIRD PKKAARVWLG TFDTAEDAAR  120
AYDDAALKFR GARAKLNFPE RVHVRDEDHL GMNIIKEERA AITDFSIQVA PATYHPSPPT  180
FVPPTYDHHL SAQTRPTHCD ADYRGNPAQH FITTDSTRLS ELSDVYHYAQ LLQNQGFDAE  240
QANSCPSLLQ QYSAYMSYQQ EKEVYNQQLA SIPPIQNQPG LDYIRQLQYT GRPNLASSNY  300
TGARLPTYNN YVLQQQQQHV LIHQQQPSIS TTGYQEVSNL DGNFIDQTSG NLLPTAQSQA  360
KYYDNSGYNS VALPANNWHC PNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2678143167ATERF1
3gcc_A5e-2678143167ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16581KKKDELQVPQNSSKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.92730.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P2880.0A9P288_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-27related to AP2 6l