PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Psi006693 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | WRKY | ||||||||
Protein Properties | Length: 390aa MW: 41789.4 Da PI: 9.0295 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.4 | 8.3e-30 | 104 | 162 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt++ Cpv+k+v+r aed +++++tYeg+Hnh Psi006693 104 SDGCQWRKYGQKMAKGNPCPRAYYRCTMSpCCPVRKQVQRLAEDRSILITTYEGSHNHM 162 7***************************9899**************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-31 | 88 | 163 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-26 | 96 | 164 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.921 | 98 | 164 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.0E-34 | 103 | 163 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-26 | 105 | 161 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
XGENDQEESK ALLTFNHIDN KHARDHDNHG STPKGHDSPD RTPSPHPSPS HHENGGTPQR 60 EGSLDRRSPG WVPNKMQKIV DQTDATIRKA RVSVRARTES PMISDGCQWR KYGQKMAKGN 120 PCPRAYYRCT MSPCCPVRKQ VQRLAEDRSI LITTYEGSHN HMLPPAATAM ASTTAAAASM 180 LLSGSSTSAD NIALNASFMA GALMQHPCNT STASISASAP FPTITLDLTH NPNQMATAPG 240 HMAASNPRAL AGLQAHAMPF VGIPHQFPTN TPQGALYHGQ SIYNAPSMFA PLAGQMQRPP 300 QPMMPTPSKL NIQPGQQQQQ QQQQPSFIDT VSAATAAITS DPNFTAALAA AITSLINNNN 360 NANSISKPNS SQAVNPSPQV AAHVKTDHNQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 90 | 166 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018811738.1 | 4e-96 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 2e-75 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A0D6R4Q0 | 1e-110 | A0A0D6R4Q0_ARACU; Uncharacterized protein | ||||
STRING | EOX93243 | 9e-92 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 4e-62 | WRKY family protein |