PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi006248

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

TALE

Protein Properties

Length: 802aa MW: 87538.9 Da PI: 8.5057

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S50071759	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.1	1.7e-09	736	773	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + Psi006248 736 FEHflHPYPTDADKHMLARQTGLSRSQVSNWFINARVR 773 554459******************************88 PP
2	BELL	118.1	4.2e-38	599	669	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r e+q++++kLls+leeV++rY qy+eq+++v+ sFe +aglg+a+pYt+lAlka+SrhF+cL+dai +q+ Psi006248 599 RFEIQRRRTKLLSMLEEVHRRYGQYCEQMKMVVTSFESIAGLGAATPYTALALKAMSRHFKCLRDAINNQL 669 779*****************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.2E-56	498	667	IPR006563	POX domain
Pfam	PF07526	1.7E-47	503	665	IPR006563	POX domain
PROSITE profile	PS50071	12.568	714	777	IPR001356	Homeobox domain
SMART	SM00389	1.8E-10	717	781	IPR001356	Homeobox domain
CDD	cd00086	5.06E-13	717	778	No hit	No description
SuperFamily	SSF46689	2.4E-17	719	784	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-28	720	783	IPR009057	Homeodomain-like
Pfam	PF05920	6.1E-19	734	773	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence Send to blast
MSEGFDTGCL DSTILEHSFL RMNQLRSQAH VAQQSRREKL RVQQNPSSPQ IGTQTDTSGF 60 SNYILQQAPQ SVITTEAHNQ TRSRDSSRGY PGHPTQANTG DEMPMYDASM LSSEMYNFPT 120 GAELLGVPPK GIVLQQASSE DGSDRPSAMG AVSYSSFGHS NSNFSGSKTS IVPNLGNWKS 180 LNTPSNSDWP IKFIHGLPNA PSGAYGGQNT IATPLVLAGG GLQAGVVKDG SLAASTNIHS 240 QADAMQLYLM NPAYAGYPEN SPPATMHPSN DNVANQGQES QKHIVEVPLQ FPSFQQNALP 300 MVAEVATSTV GSQGFCFAQL PSNLRESAQS QWPSGGNELV LMPSYGNIQN GQYLSPRLNN 360 AMNWGNRQAG SLPNSQWNQE PFVEGKVEDE FRTEQLSVGR DRSGQGLSLS LSSHQPSEMQ 420 LQQFEAMTGR TNVLQVATDG KGKSEELFNR PGTNGPGYFS SYSKDGIPGK GYGNPIQGGG 480 GGSTMVLHMN VGPLGPFTGY ASVLKSSKYL KPAQQLLDEF CNVGRGHQSN NMPKQKLSKP 540 QAGWVDRSSG GGSVVQNSLD IKSDIGGKMG DSCAAASTTF VPGETSESGM EQLAYSGDRF 600 EIQRRRTKLL SMLEEVHRRY GQYCEQMKMV VTSFESIAGL GAATPYTALA LKAMSRHFKC 660 LRDAINNQLR VTSKALGEDS SLAGVSKGET PRLRFIDQNI RQQRSVQHLG MLEQHAWRPQ 720 RGLPERSVSV LRAWLFEHFL HPYPTDADKH MLARQTGLSR SQVSNWFINA RVRLWKPMVE 780 EMYLQESKDS SEMDITLKKK KK

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence Send to blast

MSEGFDTGCL DSTILEHSFL RMNQLRSQAH VAQQSRREKL RVQQNPSSPQ IGTQTDTSGF  60
SNYILQQAPQ SVITTEAHNQ TRSRDSSRGY PGHPTQANTG DEMPMYDASM LSSEMYNFPT  120
GAELLGVPPK GIVLQQASSE DGSDRPSAMG AVSYSSFGHS NSNFSGSKTS IVPNLGNWKS  180
LNTPSNSDWP IKFIHGLPNA PSGAYGGQNT IATPLVLAGG GLQAGVVKDG SLAASTNIHS  240
QADAMQLYLM NPAYAGYPEN SPPATMHPSN DNVANQGQES QKHIVEVPLQ FPSFQQNALP  300
MVAEVATSTV GSQGFCFAQL PSNLRESAQS QWPSGGNELV LMPSYGNIQN GQYLSPRLNN  360
AMNWGNRQAG SLPNSQWNQE PFVEGKVEDE FRTEQLSVGR DRSGQGLSLS LSSHQPSEMQ  420
LQQFEAMTGR TNVLQVATDG KGKSEELFNR PGTNGPGYFS SYSKDGIPGK GYGNPIQGGG  480
GGSTMVLHMN VGPLGPFTGY ASVLKSSKYL KPAQQLLDEF CNVGRGHQSN NMPKQKLSKP  540
QAGWVDRSSG GGSVVQNSLD IKSDIGGKMG DSCAAASTTF VPGETSESGM EQLAYSGDRF  600
EIQRRRTKLL SMLEEVHRRY GQYCEQMKMV VTSFESIAGL GAATPYTALA LKAMSRHFKC  660
LRDAINNQLR VTSKALGEDS SLAGVSKGET PRLRFIDQNI RQQRSVQHLG MLEQHAWRPQ  720
RGLPERSVSV LRAWLFEHFL HPYPTDADKH MLARQTGLSR SQVSNWFINA RVRLWKPMVE  780
EMYLQESKDS SEMDITLKKK KK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-15	723	781	5	63	Homeobox protein Meis2
3k2a_B	1e-15	723	781	5	63	Homeobox protein Meis2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.4160	0.0	shoot

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q7XA57	0.0	Q7XA57_GNEGN; Putative BEL1-like protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-100	BEL1-like homeodomain 4