PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi005633 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NF-YB | ||||||||||||
Protein Properties | Length: 148aa MW: 16646.7 Da PI: 4.3906 | ||||||||||||
Description | NF-YB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 74.2 | 2e-23 | 8 | 96 | 3 | 91 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 ++d lP a + +i+k++lP + ++++da++++ ec +efi +++se+++ c re+++ti+++ +l al lGf dy+e++ + +++r Psi005633 8 KDDVSLPKATMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLISSESNEVCGREEKRTIAPEHVLRALEVLGFGDYIEEVYAAYEQHR 96 67889**************************************************************************9977666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.9E-39 | 5 | 139 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.9E-35 | 9 | 137 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.9E-20 | 12 | 76 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MDIVGKSKDD VSLPKATMFK IIKEMLPPDV RVARDAQDLL VECCVEFINL ISSESNEVCG 60 REEKRTIAPE HVLRALEVLG FGDYIEEVYA AYEQHRLETL DSPKSGRWAS GAEMTEEEAL 120 AEQQRMFAEA RARMNNGNAN PPRQSDSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 7e-37 | 9 | 131 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.8588 | 0.0 | shoot |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006841904.1 | 3e-98 | protein Dr1 homolog | ||||
Refseq | XP_011622414.1 | 3e-98 | protein Dr1 homolog | ||||
Refseq | XP_020521360.1 | 3e-98 | protein Dr1 homolog | ||||
Swissprot | P49592 | 5e-81 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | B8LMI4 | 1e-105 | B8LMI4_PICSI; Uncharacterized protein | ||||
STRING | ERN03579 | 1e-97 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 3e-85 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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