PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi005620 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bZIP | ||||||||||||
Protein Properties | Length: 149aa MW: 16971.8 Da PI: 7.514 | ||||||||||||
Description | bZIP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 78.8 | 6.5e-25 | 5 | 67 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++kv++L+ eN+aL++el+++ +e++kl++e+ Psi005620 5 ERELKRQRRKQSNRESARRSRLRKQAECEELATKVDTLTVENMALRSELNRMAEECKKLTAEN 67 89**********************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.3E-17 | 3 | 64 | No hit | No description |
SMART | SM00338 | 1.5E-22 | 5 | 69 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.0E-22 | 5 | 67 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.553 | 7 | 70 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.5E-12 | 8 | 64 | No hit | No description |
CDD | cd14702 | 1.07E-16 | 10 | 60 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 12 | 27 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MDPDERELKR QRRKQSNRES ARRSRLRKQA ECEELATKVD TLTVENMALR SELNRMAEEC 60 KKLTAENASI MERLKKLHGE DMTTITEENG STKISLQSVK PEGNGHFHDI SRGINSNSTE 120 RNEQRQSETC DSNGKVHTLL DANARSDTG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 27 | RRSRLRK |
2 | 21 | 28 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.14765 | 0.0 | shoot |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011627689.1 | 6e-38 | light-inducible protein CPRF3 isoform X2 | ||||
Refseq | XP_020530216.1 | 6e-38 | light-inducible protein CPRF3 isoform X2 | ||||
Refseq | XP_020530218.1 | 6e-38 | G-box-binding factor 1 isoform X3 | ||||
TrEMBL | A0A0C9QT24 | 2e-82 | A0A0C9QT24_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_10978_2763 transcribed RNA sequence | ||||
TrEMBL | A0A0D6QU58 | 2e-82 | A0A0D6QU58_ARACU; Uncharacterized protein | ||||
STRING | ERN17524 | 3e-37 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.2 | 2e-29 | G-box binding factor 3 |