PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi005388

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bZIP

Protein Properties

Length: 162aa MW: 18068.3 Da PI: 10.6294

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S41649813	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-16039	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.1	1.2e-15	83	144	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +ke kr +r+ +NR++A+ R+RKka++ Le++vke+e +N++L ++l++l++e + l++ Psi005388 83 DKEHKRLKRLLRNRVSAQQARERKKAYLSDLETRVKEIEHKNSELEERLSTLQNENQMLRQI 144 5899*****************************************************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00041	7.1E-5	82	98	IPR001630	cAMP response element binding (CREB) protein
SMART	SM00338	1.5E-15	83	147	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-14	84	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.472	85	148	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-13	87	145	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.2E-17	87	147	No hit	No description
CDD	cd14704	1.45E-18	88	139	No hit	No description
PROSITE pattern	PS00036	0	90	105	IPR004827	Basic-leucine zipper domain
PRINTS	PR00041	7.1E-5	100	120	IPR001630	cAMP response element binding (CREB) protein
PRINTS	PR00041	7.1E-5	120	137	IPR001630	cAMP response element binding (CREB) protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MQDTAASTST QHQSTSEKSS SSAAPAQFRL AKDAIESDDD IRRVPEMGGM QAGPSTCLPM 60 RLDNPQPTTG VVAHKKRGRA PADKEHKRLK RLLRNRVSAQ QARERKKAYL SDLETRVKEI 120 EHKNSELEER LSTLQNENQM LRQILKNTTM KKKGSGNSGA ET

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2oqq_A	5e-16	108	147	3	42	Transcription factor HY5
2oqq_B	5e-16	108	147	3	42	Transcription factor HY5
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.3473	0.0	shoot

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002324289.1	5e-52	transcription factor HY5 isoform X1
Refseq	XP_010250037.1	6e-52	PREDICTED: transcription factor HY5
Refseq	XP_013609113.1	4e-52	PREDICTED: transcription factor HY5
Refseq	XP_013687403.1	4e-52	transcription factor HY5
Swissprot	Q9SM50	1e-49	HY5_SOLLC; Transcription factor HY5
TrEMBL	A9NTI7	1e-115	A9NTI7_PICSI; Uncharacterized protein
STRING	POPTR_0018s01530.1	2e-51	(Populus trichocarpa)
STRING	Bo9g171430.1	1e-51	(Brassica oleracea)
STRING	Lus10002900	2e-51	(Linum usitatissimum)
STRING	XP_010250037.1	2e-51	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	9e-50	bZIP family protein

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]