PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi005376
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 163aa    MW: 17793.7 Da    PI: 10.9388
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S38778316PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-832PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.3e-192272155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               s+y+GVr +k +g+Wv+e+r+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  Psi005376 22 SKYRGVRMRK-WGKWVSEVREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 72
               89******99.*******9998...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.83E-282281No hitNo description
PfamPF008471.2E-122272IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-222282IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-312382IPR001471AP2/ERF domain
SMARTSM003809.3E-362386IPR001471AP2/ERF domain
PROSITE profilePS5103223.3012380IPR001471AP2/ERF domain
PRINTSPR003679.4E-102435IPR001471AP2/ERF domain
PRINTSPR003679.4E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MKRSSTGGGG GVVGGGGNGK GSKYRGVRMR KWGKWVSEVR EPNKRSRIWL GSYSTPEAAA  60
RAYDTAVFYL RGPSAALNFP DEARREQQSD FRLLQHGELS PSTIQRRAAE VGAAVDHALQ  120
TGPISTQANA LREINQENDI KKALSSKLSE GNNFKIDAKK KKX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-171682474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.104590.0needle
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028772575.19e-43ethylene-responsive transcription factor RAP2-1-like
RefseqXP_028788823.19e-43ethylene-responsive transcription factor RAP2-1-like
SwissprotQ9FH947e-40ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A0C9QLI52e-53A0A0C9QLI5_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_28325_1147 transcribed RNA sequence
STRINGAES594073e-41(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.11e-41DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]