PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi005358
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YB
Protein Properties Length: 164aa    MW: 18451.3 Da    PI: 4.4165
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S49952557PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-24654PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB43.86.2e-1410109896
      NF-YB   8 lPianvsrimkkvl........Panak...iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                lP an+ r++k  l         + ak   i k+a     e +  fi ++++ a+d c + kr+tin+dd++ a+ ++ f + ++plk+ l+ +r+ ++ 
  Psi005358  10 LPRANIRRVVKGKLsqlmkdnpSSSAKdiaIHKEALLACSESARIFIHYLSATANDICYESKRQTINADDVMKAIEEMEFPELLDPLKTSLEVFRKQNAS 109
                788888888776661111111123344333555666666777889**************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.9E-329153IPR009072Histone-fold
SuperFamilySSF471133.84E-2410134IPR009072Histone-fold
PfamPF008087.0E-82484IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MASTGEVEDL PRANIRRVVK GKLSQLMKDN PSSSAKDIAI HKEALLACSE SARIFIHYLS  60
ATANDICYES KRQTINADDV MKAIEEMEFP ELLDPLKTSL EVFRKQNASK KSENKTKTAD  120
RKRKSEVDLE MENGNGSHAE DANEAQDDFG EENKEDENDD LEED
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.76310.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245113.13e-48PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLD5ACV81e-115D5ACV8_PICSI; Uncharacterized protein
STRINGXP_010245113.11e-47(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-37nuclear factor Y, subunit B11