PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi005137
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 178aa    MW: 19712.9 Da    PI: 4.5303
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S42989290PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-1887PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.6e-162372255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++kG+r +k +g+Wv+eIr p++   r++++lg+++++e+Aa+a++ a  +l+g
  Psi005137 23 QFKGIRLRK-WGKWVSEIRMPNS---RAKIWLGSYDSPEKAARAYDFAVYCLRG 72
               69*****99.**********933...5*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-272282IPR001471AP2/ERF domain
PROSITE profilePS5103220.9162380IPR001471AP2/ERF domain
SMARTSM003806.5E-292386IPR001471AP2/ERF domain
CDDcd000189.87E-272382No hitNo description
SuperFamilySSF541711.37E-192382IPR016177DNA-binding domain
PRINTSPR003671.1E-72435IPR001471AP2/ERF domain
PfamPF008471.1E-92472IPR001471AP2/ERF domain
PRINTSPR003671.1E-74662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGKPLPKQST HRGPENSPSK SRQFKGIRLR KWGKWVSEIR MPNSRAKIWL GSYDSPEKAA  60
RAYDFAVYCL RGSKAAFNFP DSPPQIPCAS SLSPPQIQAA AARFATEDFR PPSEDDAASS  120
SSPSEAESCI DDQQISAEQG PAFWDSLLLE DLDSGESLNL EDFPPLYFSM DDFGVLFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-131980163ATERF1
3gcc_A1e-131980163ATERF1
5wx9_A2e-131380472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.76680.0shoot
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ84QC27e-38ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA9NK161e-126A9NK16_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]