PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi005026 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||||||
Protein Properties | Length: 184aa MW: 20438.9 Da PI: 10.517 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.5e-20 | 21 | 71 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrd ++ ++r++lg+f+tae+Aa+a++ a+++l+g Psi005026 21 THFRGVRKRP-WGRFAAEIRDpWK----KARVWLGTFDTAEDAARAYDDAARALRG 71 589*******.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.0E-13 | 21 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.55E-16 | 21 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-31 | 22 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 22 | 80 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.669 | 22 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-34 | 22 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-11 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-11 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MRRARVGIGG CESESRAVKE THFRGVRKRP WGRFAAEIRD PWKKARVWLG TFDTAEDAAR 60 AYDDAARALR GPKAKTNFAL AADNTASAAL ARTTNARWTR TLHPQKQWPH DLKASSVPAL 120 ESSKRHKVFL GSDCRPEFES RNNSPCAALS EQKTSSSLRK TPLLLDLNLP PSIDEDNDNE 180 SAAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 19 | 80 | 2 | 64 | ATERF1 |
3gcc_A | 1e-21 | 19 | 80 | 2 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.8051 | 0.0 | needle |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, mostly in root tip, lateral root tips, cortex and vascular tissues. {ECO:0000269|PubMed:10945353}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010278126.1 | 2e-36 | PREDICTED: ethylene-responsive transcription factor 9-like | ||||
Swissprot | Q9LW49 | 8e-33 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | D5A9F4 | 1e-131 | D5A9F4_PICSI; Uncharacterized protein | ||||
STRING | XP_010278126.1 | 8e-36 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 5e-23 | ethylene responsive element binding factor 3 |