PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi004977 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | HD-ZIP | ||||||||||||
Protein Properties | Length: 186aa MW: 21565.5 Da PI: 8.7692 | ||||||||||||
Description | HD-ZIP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.8e-18 | 37 | 91 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Psi004977 37 RKKLRLSKEQSALLEESFREHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTK 91 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.6 | 5.1e-41 | 37 | 127 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++lLEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Psi004977 37 RKKLRLSKEQSALLEESFREHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELR-ALK 127 69*************************************************************************************9.565 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.054 | 33 | 93 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-15 | 35 | 97 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.99E-18 | 36 | 101 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 37 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.33E-13 | 37 | 94 | No hit | No description |
Pfam | PF00046 | 8.5E-16 | 37 | 91 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 68 | 91 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 5.3E-22 | 93 | 136 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 6.5E-12 | 93 | 127 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MAVKRERERA FDLEAERDRT CDVSSRTSDE EEIGSTRKKL RLSKEQSALL EESFREHSTL 60 NPKQKNALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE VLKRCCENLT EENRRLQKEL 120 QELRALKAAP QPCVIGQDNY YMPLPATTLT MCPSCERVAT MENSHSRSLQ FSKSQISQFA 180 QQSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 41 | TRKKLRL |
2 | 85 | 93 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.17149 | 0.0 | needle |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024388907.1 | 2e-90 | homeobox-leucine zipper protein HAT4-like | ||||
Swissprot | P46665 | 7e-69 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A9NX56 | 1e-130 | A9NX56_PICSI; Uncharacterized protein | ||||
STRING | PP1S31_269V6.1 | 7e-90 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 9e-71 | homeobox from Arabidopsis thaliana |